by Sara Imari Walker

01 May 2019

from Nature Website

A protocell (artificial cell) dividing to produce two daughter cells.

An artist's impression of early 'protocells' proliferating.

Credit: Henning Dalhoff/Science Photo Library

Stuart Kauffman's provocative take

on emergence and evolution

energizes Sara Imari Walker.
 

A World Beyond Physics

The Emergence and Evolution of Life Stuart A. Kauffman Oxford University Press (2019)

Among the great scientific puzzles of our time is how life emerged from inorganic matter.

Scientists have probed it since the 1920s, when biochemists Alexsandr Oparin and J. B. S. Haldane (separately) investigated the properties of droplets rich in organic molecules that existed in a 'prebiotic soup' on the primitive Earth (see T. Hyman and C. Brangwynne Nature 491, 524–525; 2012).

Each hypothesized that organic compounds underwent reactions leading to more complex molecules, and eventually to the first life forms.

What was missing then, as now, is a concrete theory for the physics of what life is, testable against experiment - which is likely to be more universal than the chemistry of life on Earth.

Decades after Oparin and Haldane, Erwin Schrödinger's 1944 book What Is Life? (see P. Ball Nature 560, 548-550; 2018) attempted to lay conceptual foundations for such a theory.

Yet, more than 70 years and two generations of physicists later, researchers still ponder whether the answers lie in unknown physics. No one has led the charge on these questions quite like Stuart Kauffman.

In the 1980s and 1990s, Kauffman - a complex-systems researcher - developed a highly influential theory for life's origins, based on molecules that reproduce only collectively, called autocatalytic sets.

He posited that if a chemical soup of polymers was sufficiently diverse, these sets would emerge spontaneously as a phase transition - that is, a significant change in state or function, akin to the shift from solid to liquid.

The sets function holistically, mutually catalyzing the formation of all their molecular members.

(His inspiration was advances in the mathematics of networks by Paul Erdős and Alfréd Rényi, who had demonstrated how phase transitions occur in random networks as connectivity is increased.)

Now, in A World Beyond Physics, Kauffman elaborates.

His key insight is motivated by what he calls "the nonergodic world" - that of objects more complex than atoms. Most atoms are simple, so all their possible states can exist over a reasonable period of time.

Once they start interacting to form molecules, the number of possible states becomes mind-bogglingly massive.

Only a tiny number of proteins that are modestly complex - say, 200 amino acids long - have emerged over the entire history of the Universe. Generating all 200²⁰ of the possibilities would take aeons. Given such limitations, how does what does exist ever come into being?

This is where Kauffman expands on his autocatalytic-sets theory, introducing concepts such as closure, in which processes are linked so that each drives the next in a closed cycle.

He posits that auto-catalyzing sets (of RNA, peptides or both) encapsulated in a sphere of lipid molecules could form self-reproducing protocells. And he speculates that these protocells could evolve.

Thus, each new biological innovation begets a new functional niche fostering yet more innovation.

You cannot predict what will exist, he argues, because the function of everything biology generates will depend on what came before, and what other things exist now, with an ever-expanding set of what is possible next.

Because of this, Kauffman provocatively concludes,

there is no mathematical law that could describe the evolving diversity and abundance of life in the biosphere.

He writes:

"we do not know the relevant variables prior to their emergence in evolution."

At best, he argues, any 'laws of life' that do exist will describe statistical distributions of aspects of that evolution. For instance, they might predict the distribution of extinctions.

Life's emergence might rest on the foundations of physics,

"but it is not derivable from them", Kauffman argues.

If biology cannot be reduced to physics, however,

is it "beyond physics", as Kauffman claims?

This is an interesting time to work on life's origins:

there is intensive debate in the field about whether current physics is adequate, or whether new principles are necessary.

• Will a deep understanding of life ultimately come from comprehending how form and function arise from flows of information?

   

• Will life be understood only as a planetary-scale process, fundamentally linked to exoplanet sciences?

   

• Or will merging theory and experiment lead to new approaches to creating artificial life?

Those approaches are being developed as an international effort, which coalesced in the 2015 conference Re-Conceptualizing the Origins of Life, drawing researchers from institutions including,

• the Santa Fe Institute in New

• the Earth-Life Science Institute at the Tokyo Institute of Technology

• Arizona State University in Tempe

Within, not beyond

I agree with Kauffman that life cannot be explained by our current laws of physics, but dispute his argument that the explanation is 'beyond' physics.

The distinction might be semantic, but it is important.

Physics has already grown far beyond simply describing aspects of reality, such as,

• the very big (astronomy, cosmology)

• the very small (quantum systems, particle physics)

• the human-sized (mechanics, as studied by Galileo Galilei and Isaac Newton)

Interesting work is emerging from the study of complexity in areas such as,

• economics

• electronics

• climate physics

• the science of societies

• non-equilibrium thermodynamics

Such cross-disciplinary advances suggest that physics itself should not be defined merely by systems it has described in the past.

It is a way to view the world, one that values the most abstract, fundamental and unifying descriptions of reality, from atoms to the Universe. Within that span is biological and technological complexity in phenomena from humans to cities.

So far, this has been the hardest area in which to gain traction from first-principles approaches, because of the density of interactions across components and scales.

The question of whether there is a physics of life demands that we consider that all examples of life might at their core be part of the same fundamental phenomenon; otherwise, 'life' is not an objective property, but a collection of special cases.

This unified view seems to be in line with what Kauffman is after.

But it suggests that an explanation might demand new physics.

Statistical power

The unifying thread that explains life could be something statistical, as Kauffman proposes, and still have 'law-like' properties.

After all, some physical laws are statistical by nature, such as the second law of thermodynamics. But conventional approaches to life's origins - such as the 'RNA world' and other genetics-first models - cannot yet be formulated in this way.

That is because they make many assumptions on the basis of properties that might be unique to the chemistry of life on Earth, such as that RNA is necessary to life's origins.

The emerging areas of 'messy chemistry' and artificial-life approaches to origins research start from bottom-up chemical mixtures with minimal assumptions about what emerging life might look like.

(The chemist Lee Cronin, for example, experiments on self-assembly and self-organization in large molecules such as metal oxides.)

In this sense, the field is attempting to take an ensemble approach, and could provide new paths for developing theories on the universal principles bridging non-organic matter and life. It might inspire the next conceptual leap.

In a way that only he can, Kauffman has asked the questions we need to solve the mystery of life and its origins.

But there is much work for the next generation to do to answer them.